Project

The manta code

Species
  • Rays & Skates
Years funded
  • 2013, 2015
Status
  • Archived
Project type
  • Research
Affiliation
Description

Genetics are a powerful tool in the conservation arsenal. The Manta Trust is collecting samples from vulnerable manta rays all over the globe, and genetic analyses will help us to correctly identify species and discover which populations are most in trouble.

The manta code

Emily Humble

Project leader
About the project leader

We are living in an age of ‘big data’, when an information revolution is aiding the transition from conservation genetics (the study of the composition and functioning of a single or handful of genes) to conservation genomics (the study of the entire genetic make-up of an organism to enable a broader understanding of its influence on the species). We can now address new questions that we could never approach before, and also go back and revisit old questions in greater detail. I am a young scientist who wants to ensure that this shift is widely and robustly applied to the...

PROJECT LOCATION : Worldwide
Project details

Manta ray genetics project

Key objective

To use novel genetic tools to better understand, conserve and manage manta rays.

Why is this important

Manta rays play a key role in marine ecosystems and are of great value to humans, therefore it is vital that we use these powerful genetic techniques to better understand manta ray biology and further support their long-term conservation and management.

Background

Manta rays are some of the most beautiful and charismatic animals in our oceans and yet we know relatively little about how they came to be here and how they are likely to respond to the increasing threats being put on them.

There are two species of manta rays currently described: Manta alfredi, which leads a resident lifestyle around reefs and atolls, and Manta birostris, which leads a more migratory lifestyle, often crossing international borders. Both species present two colour-morphs – black and chevron – that are found at differing frequencies across the globe. Little is understood about the molecular basis for speciation and morphological variation of manta rays, yet in the face of increasing global fishing pressure and climate change this is vitally important to understand.

It is now possible to address such questions using next-generation DNA sequencing technologies and bioinformatics. These techniques allow us to sequence and understand more genetic data than ever before, giving us a much better understanding of how species evolve and adapt. In doing so, populations with local genetic adaptations can be identified and subsequently prioritised for conservation due to their increased potential to adapt to environmental change.

This project is one of the first to make the transition to conservation and adaptation genomics in the elasmobranch realm, and it will inevitably help to fill the striking gaps in available elasmobranch sequence data. Not only will this data help to answer questions about manta rays, it will also equip elasmobranch geneticists worldwide with a powerful set of tools for advancing their research goals.

Aims & objectives
  • Work alongside the Manta Trust, which has more than 12 field projects across the globe, to enhance and establish an extensive set of manta ray tissue samples.
  • Use comparative genomic methods to identify gene regions showing differentiation between species and populations. Thus, we’ll be able to address how these regions link to differences observed in the wild, for example, in their migratory capabilities.
  • Compare the transcriptomes of both colour-morphs to identify which regions are differentially expressed therefore indicating their role in pigmentation patterns. How has this evolved in different populations? Does it confer a selective advantage?